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pvclust package  (RStudio)

 
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    Structured Review

    RStudio pvclust package
    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
    Pvclust Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/pvclust package/product/RStudio
    Average 90 stars, based on 1 article reviews
    pvclust package - by Bioz Stars, 2026-03
    90/100 stars

    Images

    1) Product Images from "A Comparative Analysis of Innate Immune Responses and the Structural Characterization of Spike from SARS-CoV-2 Gamma Variants and Subvariants"

    Article Title: A Comparative Analysis of Innate Immune Responses and the Structural Characterization of Spike from SARS-CoV-2 Gamma Variants and Subvariants

    Journal: Microorganisms

    doi: 10.3390/microorganisms12040720

    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
    Figure Legend Snippet: Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.

    Techniques Used: Residue, Solvent, Variant Assay



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    pvclust package  (RStudio)
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    RStudio pvclust package
    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
    Pvclust Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/pvclust package/product/RStudio
    Average 90 stars, based on 1 article reviews
    pvclust package - by Bioz Stars, 2026-03
    90/100 stars
    		  Buy from Supplier
    pvclust v2.2–0 package  (RStudio)
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    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
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    https://www.bioz.com/result/pvclust v2.2–0 package/product/RStudio
    Average 90 stars, based on 1 article reviews
    pvclust v2.2–0 package - by Bioz Stars, 2026-03
    90/100 stars
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    pvclust package in r studio version 3.5.1  (RStudio)
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    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
    Pvclust Package In R Studio Version 3.5.1, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/pvclust package in r studio version 3.5.1/product/RStudio
    Average 90 stars, based on 1 article reviews
    pvclust package in r studio version 3.5.1 - by Bioz Stars, 2026-03
    90/100 stars
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    r-package pvclust  (RStudio)
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    RStudio r-package pvclust
    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The <t>pvclust</t> package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.
    R Package Pvclust, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/r-package pvclust/product/RStudio
    Average 90 stars, based on 1 article reviews
    r-package pvclust - by Bioz Stars, 2026-03
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.

    Journal: Microorganisms

    Article Title: A Comparative Analysis of Innate Immune Responses and the Structural Characterization of Spike from SARS-CoV-2 Gamma Variants and Subvariants

    doi: 10.3390/microorganisms12040720

    Figure Lengend Snippet: Comparative analysis of structural characteristics and clustering. ( A ) Clustering analysis of ASA and hydrophobicity: The pvclust package in RStudio was employed for clustering the analysis of residue models based on solvent-accessible surface (ASA) and hydrophobicity. Notably, the models of P.1.4, P.1.8, P.1 and B.1.1.28 exhibit smaller distances on their surfaces, and the model of P.1.7 displays a smaller distance relative to these clusters. In contrast, the P.1.3 and WT-Wuhan models clustered together, distant from the remaining analyzed models. ( B ) Cluster dendrogram of webPIPSA analysis: the webPIPSA analysis of electrostatic surfaces resulted in a cluster dendogram. This analysis reveals the clustering of the S protein from WT-Wuhan with the ancestral B.1.1.28 variant of the Gamma lineage. In contrast, the other variants are grouped together, indicating smaller distances among them. The red boxes indicates the number of clusters we determined for the analysis.

    Article Snippet: The gathered information for each model was subsequently saved, and cluster analysis was performed using the pvclust package within RStudio version 4.2.

    Techniques: Residue, Solvent, Variant Assay